PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf32704g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 292aa    MW: 32745.6 Da    PI: 10.0244
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf32704g00002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.71.2e-3875134261
                    zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                               +e+ lkcprC+s+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+n+k+
  Niben101Scf32704g00002.1  75 PETVLKCPRCESMNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKR 134
                               67889***************************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3063128IPR003851Zinc finger, Dof-type
PfamPF027011.5E-3277133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.30179133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MAFSSIPIYL DPPNWQHEQG NHQQQLGVAN ENPSQLSPAM PPPPAVGGGG GGGTFGSIRP  60
GLIAERARLA KVIQPETVLK CPRCESMNTK FCYFNNYSLS QPRHFCKTCR RYWTRGGALR  120
NVPVGGGCRR NNKRGTKRSR SKSPTRSEKR NCPIISPNAT TSNNSIHHLP HPTHLSFFTT  180
PNLHNFSDFT PIENGINFGG SQPQDGTRDQ MDVQARFIDQ FRFQQMQQFP FFSTLEQQPS  240
NNLYQFEAAA EYHVGEVANV KVEQNKGTNS QGLNLPRNNL GVTNNQFWTN FH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009772448.11e-172PREDICTED: dof zinc finger protein DOF3.6-like
RefseqXP_016491280.11e-172PREDICTED: dof zinc finger protein DOF3.6-like
TrEMBLM1C5E82e-94M1C5E8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000602165e-94(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.17e-41OBF-binding protein 3